Recent publications by biocurators:

Joshi-Tope. G. et al, Reactome: a knowledgebase of biological pathways.
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D428-32.
PMID: 15608231

Aitken JS, Webber BL, Bard JB. 2004. Part-of relations in anatomy ontologies: a proposal for RDFS and OWL formalisations. Pac Symp Biocomput 9: 166-177.

Asamizu E, Nakamura Y, Sato S, Tabata S. 2004. Characteristics of the Lotus japonicus gene repertoire deduced from large-scale expressed sequence tag (EST) analysis. Plant Mol Biol 54: 405-414.

Baldock RA, Bard JB, Burger A, Burton N, Christiansen J, Feng G, Hill B, Houghton D, Kaufman M, Rao J, Sharpe J, Ross A, Stevenson P, Venkataraman S, Waterhouse A, Yang Y, Davidson DR. 2004. EMAP and EMAGE: a framework for understanding spatially organized data. Nueroinformatics 1: 309-325.

Bard, JL and Rhee, SY (2004) Ontologies in biology: design, applicatioins and future challenges. Nature Review Genetics 5(3):213-22.

Berardini, TZ, Mundodi, S, Reiser, R, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11.

Berriman M, Harris M. 2004. Annotation of parasite genomes. Methods Mol Biol 270: 17-44.

Burger A, Davidson D, Baldock R. 2004. Formalization of mouse embryo anatomy. Bioinformatics 20: 259-267.

Catona E, Srinivasan P, Street WN. 2004. Protein annotation with GO codes. Medinfo 2004(CD): 1543.

Christie KR, Weng S, Balakrishnan R, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Feierbach B, Fisk DG, Hirschman JE, Hong EL, Issel-Tarver L, Nash R, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Botstein D, Cherry JM. Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.
Nucleic Acids Res. 2004 Jan 1;32 Database issue:D311-4.
PMID: 14681421

Degtyarenko K, Contrino S. 2004. COMe: the ontology of bioinorganic proteins. BMC Struct Biol 4: 3. Dwight SS, Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Engel SR, Feierbach B, Fisk DG, Hirschman J, Hong EL, Issel-Tarver L, Nash RS, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Weng S, Botstein D, Cherry JM.
Saccharomyces genome database: underlying principles and organisation.
Brief Bioinform. 2004 Mar;5(1):9-22.
PMID: 15153302

Gkoutos GV, Green EC, Mallon AM, Hancock JM, Davidson D. 2004. Building mouse phenotype ontologies. Pac Symp Biocomput 9: 178-189.

Harris TW et al. 2004. WormBase: a multi-species resource for nematode biology and genomics. Nucleic Acids Res 32: D411-D417.

Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, Richter J, Rubin GM, Blake JA, Bult C, Dolan M, Drabkin H, Eppig JT, Hill DP, Ni L, Ringwald M, Balakrishnan R, Cherry JM, Christie KR, Costanzo MC, Dwight SS, Engel S, Fisk DG, Hirschman JE, Hong EL, Nash RS, Sethuraman A, Theesfeld CL, Botstein D, Dolinski K, Feierbach B, Berardini T, Mundodi S, Rhee SY, Apweiler R, Barrell D, Camon E, Dimmer E, Lee V, Chisholm R, Gaudet P, Kibbe W, Kishore R, Schwarz EM, Sternberg P, Gwinn M, Hannick L, Wortman J, Berriman M, Wood V, de la Cruz N, Tonellato P, Jaiswal P, Seigfried T, White R; Gene Ontology Consortium.
The Gene Ontology (GO) database and informatics resource.
Nucleic Acids Res. 2004 Jan 1;32 Database issue:D258-61.
PMID: 14681407

Henrich, T., Ramialison, M., Segerdell, E., Westerfield, M., Furutani-Seiki, M., Wittbrodt, J., Kondoh, H. (2004) GSD: a genetic screen database. Mech. Dev. 121(7-8):959-963.

Krieger, CJ, Zhang, P, Mueller, L, Wang, A, Paley, S, Arnaud, M, Pick, J, Rhee, SY, and Karp, P. (2004) MetaCyc: Recent enhancements to a database of metabolic pathways and enzymes in microorganisms and plants. Nucleic Acids Research. 32 Database issue:D438-42.

Lomax J, McCray AT. 2004. Mapping the Gene Ontology into the Unified Medical Language System. Compar Funct Genom 5: 345-361.

Rhee, SY (2004)
Carpe Diem. Retooling the Publish or Perish Model into the Share and Survive Model. Plant Physiol. 134(2):543-7

Schofield PN, Bard JB, Booth C, Boniver J, Covelli V, Delvenne P, Ellender M, Engstrom W, Goessner W, Gruenberger M, Hoefler H, Hopewell J, Mancuso M, Mothersill C, Potten CS, Quintanilla-Fend L, Rozell B, Sariola H, Sundberg JP, Ward A. 2004. Pathbase: a database of mutant mouse pathology. Nucleic Acids Res 32: D512-D515.

Sprague, J., Clements, D., Conlin, T., Edwards, P., Frazer, K., Schaper, K., Segerdell, E., Song, P., Sprunger, B., and Westerfield, M. (2003) The Zebrafish Information Network (ZFIN): the zebrafish model organism database. Nucl. Acids Res. 31(1):241-243.

Weems, D, Miller, N, Garcia-Hernanzez, M, Huala, E, and Rhee, SY (2004) Design, implementation, and maintenance of a model organism database for Arabidopsis thaliana. Functional and Integrative Genomics. Comparative and Functional Genomics. 5(4):362-369.

Blake JA, Harris M. 2003. The Gene Ontology Project: Structured vocabularies for molecular biology and their application to genome and expression analysis. In: A.D. Baxevanis, D.B. Davison, R. Page, G. Stormo and L. Stein (eds.), Current Protocols in Bioinformatics. Wiley and Sons, Inc., New York.

Camon E, Barrell D, Lee V, Dimmer E, Apweiler R. 2003. The Gene Ontology Annotation (GOA) Database - An integrated resource of GO annotations to the UniProt Knowledgebase. In Silico Biol 4: 5-6.

Haft DH, Selengut JD, White O. 2003. The TIGRFAMs database of protein families. Nucleic Acids Res 31: 371-373.

Mueller, LA., Zhang, P., Rhee SY (2003)
AraCyc. A Biochemical Pathway Database for Arabidopsis. Plant Physiology. 2003 132(2):453-60

Rhee SY, Beavis W, Berardini TZ, Chen G, Dixon D, Doyle A, Garcia-Hernandez M, Huala E, Lander G, Montoya M, Miller N, Mueller LA, Mundodi S, Reiser L, Tacklind J, Weems DC, Wu Y, Xu I, Yoo D, Yoon J, Zhang P. (2003) The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Research 31(1):224

Drysdale, R.(2001) Phenotypic data in FlyBase. Brief. Bioinform. 2(1):68—80
PMID:11465064

Misra. S. et al., Annotation of the Drosophila melanogaster euchromatic genome: a systematic review. GenomeBiol. 3(12):RESEARCH0083 PMID:12537572